MolNFT v1 · #184126 · protein
Crystal structure of an intein from a hyperthermophile
7OEC · DNA polymerase II large subunit: “Crystal structure of an intein from a hyperthermophile”. X-ray diffraction, 3 ligands (SNN, ZN, SO4). MolNFT v1 #184126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OEC
- Type
- protein
- Length
- 167 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase II large subunit
- EC
- 2.7.7.7, 3.1.11.1
- UniProt
- O57861
- Ligands
- SNN, ZN, SO4
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase II large subunit (EC 2.7.7.7, 3.1.11.1) | protein | 167 | 5% helix, 57% strand | O57861 |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O57861
- Elsewhere: RCSB PDB 7OEC · PDBe 7OEC · UniProt O57861
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