MolNFT v1 · #184119 · protein
Model of closed pentamer of the haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction
7OE2 · LINOCIN_M18 bacteriocin protein: “Model of closed pentamer of the haliangium ochraceum encapsulin from symmetry expansion of icosahedral single…”. Electron microscopy, 12 pockets (best druggability 0.65). MolNFT v1 #184119 on…
- PDB
- 7OE2
- Type
- protein
- Length
- 1,375 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LINOCIN_M18 bacteriocin protein; Haliangium ochraceum encapsulated ferritin localisation…
- UniProt
- D0LZ74, D0LZ73
- Pockets
- 12 · best druggability 0.65
Structure
electron microscopy · 2 distinct chains · 36% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | LINOCIN_M18 bacteriocin protein | protein | 266 | 37% helix, 30% strand | D0LZ74 |
| 1, 2, 3, 4, 5 | Haliangium ochraceum encapsulated ferritin localisation sequence | protein | 9 | 0% helix, 0% strand | D0LZ73 |
Pockets
12 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 435 | 0.65 | 0.78 | 51 | empty |
| 2 | 433 | 0.64 | 0.78 | 50 | empty |
| 3 | 413 | 0.64 | 0.78 | 47 | empty |
| 4 | 399 | 0.64 | 0.78 | 48 | empty |
| 5 | 417 | 0.63 | 0.77 | 50 | empty |
Interfaces
10 interfaces between chains.
- A–B · 983 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 982 Ų buried · 9 hydrogen bonds · protein-protein
- A–E · 982 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 980 Ų buried · 10 hydrogen bonds · protein-protein
- D–E · 974 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7OE2 · Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0LZ74
- Every structure of UniProt D0LZ73
- Elsewhere: RCSB PDB 7OE2 · PDBe 7OE2 · UniProt D0LZ74 · UniProt D0LZ73
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