MolNFT v1 · #184116 · protein
Dictyostelium discoideum dye decolorizing peroxidase dypa in complex with an activated form of oxygen and veratryl alcohol
7ODZ: “Dictyostelium discoideum dye decolorizing peroxidase dypa in complex with an activated form of oxygen and…”. X-ray diffraction, 3 ligands (VOH, HEM, OXY). MolNFT v1 #184116 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7ODZ
- Type
- protein
- Length
- 614 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q556V8
- Ligands
- VOH, HEM, OXY
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 307 | — | Q556V8 |
Ligands and binding sites
- VOH · Veratryl alcohol · ligand · 4 copies · chains A, B
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- OXY · Oxygen molecule · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ODZ · Dictyostelium discoideum dye decolorizing peroxidase DyPA in complex with an activated… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q556V8
- Elsewhere: RCSB PDB 7ODZ · PDBe 7ODZ · UniProt Q556V8
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