MolNFT v1 · #184115 · protein
Cyanophage S-2L mazg-like pyrophosphohydrolase bound to dgdp and three catalytic MN2+ ions per active site
7ODY: “Cyanophage S-2L mazg-like pyrophosphohydrolase bound to dgdp and three catalytic MN2+ ions per active site”. X-ray diffraction, 3 ligands (DGI, MN, SO4). MolNFT v1 #184115 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7ODY
- Type
- protein
- Length
- 385 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- DGI, MN, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 99 | — | — |
| B | — | protein | 94 | — | — |
| C | — | protein | 100 | — | — |
| D | — | protein | 92 | — | — |
Ligands and binding sites
- DGI · 2'-deoxyguanosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- MN · Manganese (II) ion · metal · 12 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 8 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ODY · Cyanophage S-2L MazG-like pyrophosphohydrolase bound to dGDP and three catalytic Mn2+… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7ODY · PDBe 7ODY
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