MolNFT v1 · #184045 · protein

Crystal structure of the human prolyl endopeptidase-like protein short form (residues 90-727)

7OBM: “Crystal structure of the human prolyl endopeptidase-like protein short form (residues 90-727)”. X-ray diffraction, 7 pockets (best druggability 0.77). MolNFT v1 #184045 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7OBM
Type: protein
Length: 624 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Prolyl endopeptidase-like
EC: 3.4.21.-
UniProt: Q4J6C6
Pockets: 7 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Prolyl endopeptidase-like (EC 3.4.21.-)	protein	624	20% helix, 34% strand	Q4J6C6

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	384	0.77	0.87	43	empty
2	388	0.72	0.83	46	empty
3	356	0.70	0.83	45	empty
4	146	0.55	0.81	23	empty
5	62	0.43	0.82	15	empty

Compared structures

7OBM · Crystal structure of the human Prolyl Endopeptidase-Like protein short form (residues… · the same entry in another collection · chain A against A, TM-score 1.00
Q4J6C6 · AlphaFold monomer V2.0 prediction for prolyl endopeptidase-like (Q4J6C6) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4J6C6
Elsewhere: RCSB PDB 7OBM · PDBe 7OBM · UniProt Q4J6C6

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