MolNFT v1 · #183991 · protein

Solution structure of oxidized cytochrome C552 from thioalkalivibrio paradoxus

7O9U: “Solution structure of oxidized cytochrome C552 from thioalkalivibrio paradoxus”. Solution nmr, 1 ligand (HEC), 1 pocket (best druggability 0.66). MolNFT v1 #183991 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7O9U
Type: protein
Length: 153 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C552
Ligands: HEC
Pockets: 1 · best druggability 0.66

Structure

solution nmr · 1 distinct chain · 38% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C552	protein	153	38% helix, 0% strand	—

Ligands and binding sites

HEC · Heme C · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	279	0.66	0.82	30	HEC

Modifications

Observed in the structure: 2 cofactor (heme c attachment).

Compared structures

7O9U · Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7O9U · PDBe 7O9U

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