MolNFT v1 · #183981 · protein
Escherichia COLI ffh in complex with ppgpp
7O9G · Signal recognition particle protein: “Escherichia COLI ffh in complex with ppgpp”. X-ray diffraction, 2 ligands (G4P, MG), 2 pockets (best druggability 0.52). MolNFT v1 #183981 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7O9G
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Signal recognition particle protein
- UniProt
- A0A3P5DUI2
- Ligands
- G4P, MG
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Signal recognition particle protein | protein | 294 | 56% helix, 13% strand | A0A3P5DUI2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.52 | 0.80 | 22 | empty |
| 2 | 69 | 0.34 | 0.76 | 16 | MG |
Compared structures
- 7O9G · Escherichia coli Ffh in complex with ppGpp · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A3P5DUI2
- Elsewhere: RCSB PDB 7O9G · PDBe 7O9G · UniProt A0A3P5DUI2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.