MolNFT v1 · #183903 · protein

Structure of the borneol dehydrogenase 1 of salvia rosmarinus

7O6Q: “Structure of the borneol dehydrogenase 1 of salvia rosmarinus”. Electron microscopy, 13 pockets (best druggability 0.85). MolNFT v1 #183903 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7O6Q
Type: protein
Length: 997 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Borneol dehydrogenase
Pockets: 13 · best druggability 0.85

Structure

electron microscopy · 3 distinct chains · 52% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Borneol dehydrogenase	protein	248	52% helix, 16% strand	—
C	Borneol dehydrogenase	protein	251	53% helix, 16% strand	—
D	Borneol dehydrogenase	protein	250	52% helix, 16% strand	—

Pockets

13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1049	0.85	0.86	62	empty
2	303	0.62	0.79	41	empty
3	294	0.61	0.79	40	empty
4	305	0.61	0.78	40	empty
5	291	0.60	0.78	40	empty

Interfaces

6 interfaces between chains.

A–B · 1562 Å² buried · 12 hydrogen bonds · protein-protein
C–D · 1553 Å² buried · 9 hydrogen bonds · protein-protein
B–C · 1532 Å² buried · 16 hydrogen bonds · protein-protein
A–D · 1526 Å² buried · 17 hydrogen bonds · protein-protein
A–C · 999 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

7O6Q · Structure of the borneol dehydrogenase 1 of salvia rosmarinus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7O6Q · PDBe 7O6Q

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