MolNFT v1 · #183878 · protein
Crystal structure of the C-terminal pasta domains of staphylococcus aureus PBP1
7O61 · Penicillin-binding protein 1: “Crystal structure of the C-terminal pasta domains of staphylococcus aureus PBP1”. X-ray diffraction, 1 pocket (best druggability 0.69). MolNFT v1 #183878 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7O61
- Type
- protein
- Length
- 233 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 1
- UniProt
- Q2FZ94
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 1 | protein | 116 | 17% helix, 34% strand | Q2FZ94 |
| B | Penicillin-binding protein 1 | protein | 117 | 18% helix, 32% strand | Q2FZ94 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 586 | 0.69 | 0.78 | 45 | empty |
Interfaces
1 interface between chains.
- A–B · 668 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7O61 · Crystal structure of the C-terminal PASTA domains of Staphylococcus aureus PBP1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2FZ94
- Elsewhere: RCSB PDB 7O61 · PDBe 7O61 · UniProt Q2FZ94
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