MolNFT v1 · #183825 · protein

Crystal structure of pasta domains of the penicillin-binding protein 1 (PBP1) from staphylococcus aureus

7O4C: “Crystal structure of pasta domains of the penicillin-binding protein 1 (PBP1) from staphylococcus aureus”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.70). MolNFT v1 #183825 on GenesisL1: 3D structure, binding…

PDB: 7O4C
Type: protein
Length: 234 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penicillin-binding protein 1
UniProt: A0A0H2WVW5
Ligands: CL
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Penicillin-binding protein 1	protein	117	17% helix, 32% strand	A0A0H2WVW5

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	661	0.70	0.78	51	empty

Interfaces

1 interface between chains.

A–B · 671 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

7O4C · Crystal structure of PASTA domains of the Penicillin-Binding Protein 1 (PBP1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H2WVW5
Elsewhere: RCSB PDB 7O4C · PDBe 7O4C · UniProt A0A0H2WVW5

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