MolNFT v1 · #183789 · protein
Cytochrome C KUSTC0562 from kuenenia stuttgartiensis
7O38 · Cytochrome C-552 KS_3357: “Cytochrome C KUSTC0562 from kuenenia stuttgartiensis”. X-ray diffraction, 2 ligands (HEC, CL), 1 pocket (best druggability 0.70). MolNFT v1 #183789 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7O38
- Type
- protein
- Length
- 81 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-552 KS_3357
- UniProt
- Q30JB4
- Ligands
- HEC, CL
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C-552 KS_3357 | protein | 81 | 53% helix, 0% strand | Q30JB4 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
- CL · Chloride ion · ion · chains A
- IMD · Imidazole · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 320 | 0.70 | 0.83 | 29 | HEC, IMD |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 7O38 · cytochrome C kustc0562 from Kuenenia stuttgartiensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q30JB4
- Elsewhere: RCSB PDB 7O38 · PDBe 7O38 · UniProt Q30JB4
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