MolNFT v1 · #183752 · protein
Structure of bdellovibrio bacteriovorus BD1075
7O21 · Uncharacterized conserved: “Structure of bdellovibrio bacteriovorus BD1075”. X-ray diffraction, 2 ligands (BR, SCN), 6 pockets (best druggability 0.77). MolNFT v1 #183752 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7O21
- Type
- protein
- Length
- 544 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized conserved
- UniProt
- Q6MNZ7
- Ligands
- BR, SCN
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized conserved | protein | 276 | 23% helix, 40% strand | Q6MNZ7 |
| B | Uncharacterized conserved | protein | 268 | 24% helix, 42% strand | Q6MNZ7 |
Ligands and binding sites
- BR · Bromide ion · ion · 19 copies · chains A, B
- SCN · Thiocyanate ion · ion · chains A, B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 616 | 0.77 | 0.83 | 75 | BR, EDO |
| 2 | 617 | 0.74 | 0.80 | 67 | SCN, BR |
| 3 | 121 | 0.42 | 0.76 | 26 | empty |
| 4 | 104 | 0.40 | 0.76 | 21 | empty |
| 5 | 60 | 0.33 | 0.77 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 832 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7O21 · Structure of Bdellovibrio bacteriovorus Bd1075 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6MNZ7
- Elsewhere: RCSB PDB 7O21 · PDBe 7O21 · UniProt Q6MNZ7
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