MolNFT v1 · #183484 · DNA + RNA

The crystal structure of a DNA:RNA hybrid duplex sequence cttttctttg

7NRP · RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'): “The crystal structure of a DNA:RNA hybrid duplex sequence cttttctttg”. X-ray diffraction. MolNFT v1 #183484 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7NRP
Type: DNA + RNA
Length: 20 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'); DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (5'-R(CPAPAPAPGPAPAPAPAPG)-3')	rna	10	—	—
B	DNA (5'-D(CPTPTPTPTPCPTPTPTPG)-3')	dna	10	—	—

Ligands and binding sites

CAC · Cacodylate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 468 Å² buried · 45 hydrogen bonds · nucleic-nucleic

Compared structures

7NRP · The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7NRP · PDBe 7NRP

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