MolNFT v1 · #18348 · protein
Crystal structure of nitrophorin 2 L122V/L132V mutant complex with imidazole
1PM1: “Crystal structure of nitrophorin 2 L122V/L132V mutant complex with imidazole”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.72). MolNFT v1 #18348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PM1
- Type
- protein
- Length
- 180 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrophorin 2
- UniProt
- Q26241
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Nitrophorin 2 | protein | 180 | 13% helix, 46% strand | Q26241 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 365 | 0.72 | 0.83 | 45 | HEM, IMD |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1PM1 · Crystal structure of nitrophorin 2 L122V/L132V mutant complex with imidazole · the same entry in another collection · chain X against X, TM-score 1.00
- Q26241 · AlphaFold monomer V2.0 prediction for nitrophorin-2 (Q26241) · a predicted model of the same protein · chain X against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q26241
- Elsewhere: RCSB PDB 1PM1 · PDBe 1PM1 · UniProt Q26241
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