MolNFT v1 · #18347 · DNA
Sodium ions and water molecules in the structure of poly D(A)(DOT)POLY D(T)
1PLY · DNA (5'-D(P*AP*AP*AP*AP*A)-3'): “Sodium ions and water molecules in the structure of poly D(A)(DOT)POLY D(T)”. Fiber diffraction, 1 ligand (NA). MolNFT v1 #18347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PLY
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 2
- Method
- fiber diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(P*AP*AP*AP*AP*A)-3'); DNA (5'-D(P*TP*TP*TP*TP*T)-3')
- Ligands
- NA
Structure
fiber diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(P*AP*AP*AP*AP*A)-3') | dna | 5 | — | — |
| B | DNA (5'-D(P*TP*TP*TP*TP*T)-3') | dna | 5 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 226 Ų buried · 10 hydrogen bonds · nucleic-nucleic
Compared structures
- 1PLY · Sodium ions and water molecules in the structure of poly D(A)(DOT)POLY D(T) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1PLY · PDBe 1PLY
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