MolNFT v1 · #183397 · protein
Structure of the mature rsv ca lattice: group III, hexamer-hexamer interface, class 3'4
7NOD · Capsid protein P27, alternate cleaved 1: “Structure of the mature rsv ca lattice: group III, hexamer-hexamer interface, class 3'4”. Electron microscopy, 15 pockets (best druggability 0.59). MolNFT v1 #183397 on GenesisL1: 3D…
- PDB
- 7NOD
- Type
- protein
- Length
- 1,302 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein P27, alternate cleaved 1
- UniProt
- P03322
- Pockets
- 15 · best druggability 0.59
Structure
electron microscopy · 3 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, G, I | Capsid protein P27, alternate cleaved 1 | protein | 78 | 63% helix, 0% strand | P03322 |
| B, E | Capsid protein P27, alternate cleaved 1 | protein | 217 | 66% helix, 0% strand | P03322 |
| C, F, H, J | Capsid protein P27, alternate cleaved 1 | protein | 139 | 68% helix, 0% strand | P03322 |
Pockets
15 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 630 | 0.59 | 0.73 | 100 | empty |
| 2 | 316 | 0.48 | 0.72 | 60 | empty |
| 3 | 320 | 0.48 | 0.72 | 67 | empty |
| 4 | 296 | 0.47 | 0.73 | 63 | empty |
| 5 | 262 | 0.45 | 0.72 | 57 | empty |
Interfaces
12 interfaces between chains.
- B–C · 125 Ų buried · 0 hydrogen bonds · protein-protein
- E–F · 101 Ų buried · 0 hydrogen bonds · protein-protein
- E–I · 91 Ų buried · 1 hydrogen bond · protein-protein
- A–E · 87 Ų buried · 1 hydrogen bond · protein-protein
- D–E · 82 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7NOD · Structure of the mature RSV CA lattice: Group III, hexamer-hexamer interface, class 3'4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03322
- Elsewhere: RCSB PDB 7NOD · PDBe 7NOD · UniProt P03322
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