MolNFT v1 · #183388 · protein
Structure of the mature rsv ca lattice: hexamer with 3 adjacent pentamers (C3 symmetric)
7NO4 · Capsid protein P27, alternate cleaved 1: “Structure of the mature rsv ca lattice: hexamer with 3 adjacent pentamers (C3 symmetric)”. Electron microscopy, 16 pockets (best druggability 0.53). MolNFT v1 #183388 on GenesisL1: 3D…
- PDB
- 7NO4
- Type
- protein
- Length
- 1,296 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein P27, alternate cleaved 1
- UniProt
- P03322
- Pockets
- 16 · best druggability 0.53
Structure
electron microscopy · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Capsid protein P27, alternate cleaved 1 | protein | 216 | 66% helix, 0% strand | P03322 |
Pockets
16 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 434 | 0.53 | 0.72 | 79 | empty |
| 2 | 375 | 0.51 | 0.73 | 68 | empty |
| 3 | 371 | 0.50 | 0.72 | 73 | empty |
| 4 | 260 | 0.44 | 0.72 | 51 | empty |
| 5 | 206 | 0.42 | 0.73 | 50 | empty |
Interfaces
6 interfaces between chains.
- E–F · 160 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 159 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 157 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 96 Ų buried · 0 hydrogen bonds · protein-protein
- A–F · 96 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7NO4 · Structure of the mature RSV CA lattice: hexamer with 3 adjacent pentamers (C3 symmetric) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03322
- Elsewhere: RCSB PDB 7NO4 · PDBe 7NO4 · UniProt P03322
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