MolNFT v1 · #183343 · protein
Crystal structure of polyphosphate kinase 2 from deinococcus radiodurans in complex with ADP
7NMJ: “Crystal structure of polyphosphate kinase 2 from deinococcus radiodurans in complex with ADP”. X-ray diffraction, 3 ligands (ADP, MG, PO4). MolNFT v1 #183343 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NMJ
- Type
- protein
- Length
- 1,064 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9RY20
- Ligands
- ADP, MG, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 266 | — | Q9RY20 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains A, B, C, D
- MG · Magnesium ion · metal · chains D
- PO4 · Phosphate ion · ion · chains D
- GOL · Glycerol · additive · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NMJ · Crystal structure of Polyphosphate Kinase 2 from Deinococcus radiodurans in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RY20
- Elsewhere: RCSB PDB 7NMJ · PDBe 7NMJ · UniProt Q9RY20
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