MolNFT v1 · #183089 · DNA + RNA
Solution structure of DNA:RNA hybrid duplex
7NEJ · DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'): “Solution structure of DNA:RNA hybrid duplex”. Solution nmr. MolNFT v1 #183089 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NEJ
- Type
- DNA + RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3'); RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3')
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*TP*AP*CP*AP*CP*GP*G)-3') | dna | 8 | — | — |
| B | RNA (5'-R(*CP*CP*GP*UP*GP*UP*AP*G)-3') | rna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 396 Ų buried · 36 hydrogen bonds · nucleic-nucleic
Compared structures
- 7NEJ · Solution structure of DNA:RNA hybrid duplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7NEJ · PDBe 7NEJ
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