MolNFT v1 · #183087 · protein
Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in complex with covox-269 Fab
7NEH: “Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in complex with covox-269…”. X-ray diffraction, 5 ligands (NAG, FUC, NO3). MolNFT v1 #183087 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7NEH
- Type
- protein
- Length
- 630 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC, NO3, SO4, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 219 | — | — |
| L | — | protein | 215 | — | — |
| E | — | protein | 196 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains E
- FUC · alpha-L-fucopyranose · sugar
- NO3 · Nitrate ion · ion · 3 copies · chains H, L, E
- SO4 · Sulfate ion · ion · chains L
- CL · Chloride ion · ion · chains H, E
- EDO · 1,2-ethanediol · additive · 19 copies · chains H, E, L
- PEG · Di(hydroxyethyl)ether · additive · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NEH · Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7NEH · PDBe 7NEH · UniProt P0DTC2
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