MolNFT v1 · #183086 · protein
Crystal structure of the N501Y mutant receptor binding domain of SARS- cov-2 spike glycoprotein in complex with covox-269 Fab
7NEG: “Crystal structure of the N501Y mutant receptor binding domain of SARS- cov-2 spike glycoprotein in complex…”. X-ray diffraction, 3 ligands (NAG, FUC, SO4). MolNFT v1 #183086 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7NEG
- Type
- protein
- Length
- 614 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A7D5QNT3
- Ligands
- NAG, FUC, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 217 | — | — |
| L | — | protein | 214 | — | — |
| E | — | protein | 183 | — | A0A7D5QNT3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains E
- FUC · alpha-L-fucopyranose · sugar
- SO4 · Sulfate ion · ion · 3 copies · chains H, L, E
- GOL · Glycerol · additive · 5 copies · chains H, L, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NEG · Crystal structure of the N501Y mutant receptor binding domain of SARS-CoV-2 Spike… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A7D5QNT3
- Elsewhere: RCSB PDB 7NEG · PDBe 7NEG · UniProt A0A7D5QNT3
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