MolNFT v1 · #183056 · protein
Crystal structure of ZC3H12C pin domain
7NDH · Probable ribonuclease ZC3H12C: “Crystal structure of ZC3H12C pin domain”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.51). MolNFT v1 #183056 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NDH
- Type
- protein
- Length
- 334 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ribonuclease ZC3H12C
- EC
- 3.1.-.-
- UniProt
- Q5DTV4
- Ligands
- NA
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ribonuclease ZC3H12C (EC 3.1.-.-) | protein | 169 | 38% helix, 24% strand | Q5DTV4 |
| B | Probable ribonuclease ZC3H12C (EC 3.1.-.-) | protein | 165 | 38% helix, 25% strand | Q5DTV4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.51 | 0.86 | 18 | EDO |
| 2 | 143 | 0.46 | 0.77 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1011 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5DTV4
- Elsewhere: RCSB PDB 7NDH · PDBe 7NDH · UniProt Q5DTV4
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