MolNFT v1 · #182841 · protein
Crystal structure of HCAN_0198, a 3,4-ketoisomerase from helicobacter canadensis
7N67 · Fdta domain-containing protein: “Crystal structure of HCAN_0198, a 3,4-ketoisomerase from helicobacter canadensis”. X-ray diffraction, 1 ligand (TYD), 1 pocket (best druggability 0.44). MolNFT v1 #182841 on GenesisL1: 3D structure…
- PDB
- 7N67
- Type
- protein
- Length
- 265 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fdta domain-containing protein
- UniProt
- C5ZW00
- Ligands
- TYD
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fdta domain-containing protein | protein | 132 | 8% helix, 48% strand | C5ZW00 |
| B | Fdta domain-containing protein | protein | 133 | 8% helix, 47% strand | C5ZW00 |
Ligands and binding sites
- TYD · Thymidine-5'-diphosphate · ligand · 2 copies · chains A, B
- TMA · Tetramethylammonium ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.44 | 0.79 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 526 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7N67 · Crystal structure of HCAN_0198, a 3,4-ketoisomerase from Helicobacter canadensis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5ZW00
- Elsewhere: RCSB PDB 7N67 · PDBe 7N67 · UniProt C5ZW00
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