MolNFT v1 · #182767 · protein
Oridonin-bound SARS-cov-2 NSP9
7N3K: “Oridonin-bound SARS-cov-2 NSP9”. X-ray diffraction, 2 ligands (ODN, SO4). MolNFT v1 #182767 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7N3K
- Type
- protein
- Length
- 989 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- ODN, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, H | — | protein | 124 | — | P0DTD1 |
| G | — | protein | 121 | — | P0DTD1 |
Ligands and binding sites
- ODN · (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14r, 16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- SO4 · Sulfate ion · ion · 4 copies · chains A, B, C, D, E, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7N3K · Oridonin-bound SARS-CoV-2 Nsp9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7N3K · PDBe 7N3K · UniProt P0DTD1
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