MolNFT v1 · #182762 · protein

Crystal structure of an anti-SARS-cov-2 human neutralizing antibody Fab fragment C080

7N3F · C080 Fab heavy chain: “Crystal structure of an anti-SARS-cov-2 human neutralizing antibody Fab fragment C080”. X-ray diffraction, 5 pockets (best druggability 0.44). MolNFT v1 #182762 on GenesisL1: 3D structure, binding sites and…

PDB: 7N3F
Type: protein
Length: 437 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C080 Fab heavy chain; C080 Fab light chain
Pockets: 5 · best druggability 0.44

Structure

x-ray diffraction · 2 distinct chains · 8% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
H	C080 Fab heavy chain	protein	221	7% helix, 52% strand	—
L	C080 Fab light chain	protein	216	9% helix, 48% strand	—

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.44	0.79	22	empty
2	53	0.39	0.81	20	empty
3	63	0.36	0.78	18	empty
4	62	0.30	0.75	19	empty
5	51	0.24	0.72	14	empty

Interfaces

1 interface between chains.

H–L · 1924 Å² buried · 12 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

7N3F · Crystal structure of an anti-SARS-CoV-2 human neutralizing antibody Fab fragment C080 · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7N3F · PDBe 7N3F

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