MolNFT v1 · #182600 · protein
Crystal structure of the SPA17 docking and dimerization domain from danio rerio
7MY4 · Sperm autoantigenic protein 17: “Crystal structure of the SPA17 docking and dimerization domain from danio rerio”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #182600 on GenesisL1: 3D structure, binding sites…
- PDB
- 7MY4
- Type
- protein
- Length
- 264 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sperm autoantigenic protein 17
- UniProt
- F1QK17
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Sperm autoantigenic protein 17 | protein | 66 | 52% helix, 0% strand | F1QK17 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.44 | 0.74 | 18 | empty |
| 2 | 162 | 0.42 | 0.73 | 18 | empty |
Interfaces
2 interfaces between chains.
- B–D · 1095 Ų buried · 11 hydrogen bonds · protein-protein
- A–C · 1087 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7MY4 · Crystal Structure of the SPA17 Docking and Dimerization Domain from Danio rerio · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F1QK17
- Elsewhere: RCSB PDB 7MY4 · PDBe 7MY4 · UniProt F1QK17
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