MolNFT v1 · #182546 · protein
Structure of the SARS-cov-2 spike trimer with two rbds down in complex with the Fab fragment of human neutralizing antibody clone 6
7MW3: “Structure of the SARS-cov-2 spike trimer with two rbds down in complex with the Fab fragment of human…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #182546 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MW3
- Type
- protein
- Length
- 4,295 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L, G, E | — | protein | 215 | — | — |
| H, F, D | — | protein | 212 | — | — |
| C, A | — | protein | 1004 | — | P0DTC2 |
| B | — | protein | 1006 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 72 copies · chains C, B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MW3 · Structure of the SARS-CoV-2 Spike trimer with two RBDs down in complex with the Fab… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7MW3 · PDBe 7MW3 · UniProt P0DTC2
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