MolNFT v1 · #182503 · protein
SARS-cov-2 NSP2
7MSX · Non-structural protein 2: “SARS-cov-2 NSP2”. Electron microscopy, 1 ligand (ZN), 7 pockets (best druggability 0.53). MolNFT v1 #182503 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MSX
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-structural protein 2
- UniProt
- P0DTD1
- Ligands
- ZN
- Pockets
- 7 · best druggability 0.53
Structure
electron microscopy · 1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-structural protein 2 | protein | 473 | 38% helix, 21% strand | P0DTD1 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 256 | 0.53 | 0.76 | 30 | empty |
| 2 | 164 | 0.48 | 0.77 | 22 | empty |
| 3 | 145 | 0.44 | 0.75 | 17 | empty |
| 4 | 125 | 0.39 | 0.75 | 22 | empty |
| 5 | 97 | 0.37 | 0.75 | 21 | empty |
Compared structures
- 7MSX · SARS-CoV-2 Nsp2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7MSX · PDBe 7MSX · UniProt P0DTD1
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