MolNFT v1 · #182499 · protein
Complex between the Fab arm of ab-3467 and the SARS-cov-2 receptor binding domain (rbd)
7MSQ: “Complex between the Fab arm of ab-3467 and the SARS-cov-2 receptor binding domain (rbd)”. X-ray diffraction, 6 ligands (NAG, BMA, MAN). MolNFT v1 #182499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MSQ
- Type
- protein
- Length
- 1,253 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA, MAN, FUC, CL, SCN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 195 | — | P0DTC2 |
| B | — | protein | 189 | — | P0DTC2 |
| D, H | — | protein | 221 | — | — |
| E | — | protein | 213 | — | — |
| L | — | protein | 214 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- MAN · alpha-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar
- CL · Chloride ion · ion · 7 copies · chains A, B, D, E, H, L
- SCN · Thiocyanate ion · ion · 5 copies · chains B, E, L, H
- GOL · Glycerol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MSQ · Complex between the Fab arm of AB-3467 and the SARS-CoV-2 receptor binding domain (RBD) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7MSQ · PDBe 7MSQ · UniProt P0DTC2
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