MolNFT v1 · #182498 · protein

Suns glycosin S-glycosyltransferase

7MSP · Spbeta prophage-derived glycosyltransferase suns: “Suns glycosin S-glycosyltransferase”. X-ray diffraction, 2 ligands (UPG, MG), 4 pockets (best druggability 0.83). MolNFT v1 #182498 on GenesisL1: 3D structure, binding sites and…

PDB: 7MSP
Type: protein
Length: 666 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Spbeta prophage-derived glycosyltransferase suns
EC: 2.4.1.-
UniProt: O31986
Ligands: UPG, MG
Pockets: 4 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Spbeta prophage-derived glycosyltransferase suns (EC 2.4.1.-)	protein	333	45% helix, 17% strand	O31986
B	Spbeta prophage-derived glycosyltransferase suns (EC 2.4.1.-)	protein	333	45% helix, 17% strand	O31986

Ligands and binding sites

UPG · Uridine-5'-diphosphate-glucose · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1067	0.83	0.84	85	MG, UPG
2	1107	0.82	0.84	87	UPG, MG
3	96	0.37	0.75	16	empty
4	81	0.35	0.76	18	empty

Interfaces

1 interface between chains.

A–B · 897 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

7MSP · SunS glycosin S-glycosyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
O31986 · AlphaFold monomer V2.0 prediction for spbeta prophage-derived glycosyltransferase suns… · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O31986
Elsewhere: RCSB PDB 7MSP · PDBe 7MSP · UniProt O31986

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