MolNFT v1 · #182496 · protein
Suns glycosin S-glycosyltransferase
7MSN · Spbeta prophage-derived glycosyltransferase suns: “Suns glycosin S-glycosyltransferase”. X-ray diffraction, 1 ligand (UPG), 5 pockets (best druggability 0.81). MolNFT v1 #182496 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7MSN
- Type
- protein
- Length
- 833 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spbeta prophage-derived glycosyltransferase suns
- EC
- 2.4.1.-
- UniProt
- O31986
- Ligands
- UPG
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Spbeta prophage-derived glycosyltransferase suns (EC 2.4.1.-) | protein | 417 | 50% helix, 13% strand | O31986 |
| B | Spbeta prophage-derived glycosyltransferase suns (EC 2.4.1.-) | protein | 416 | 51% helix, 14% strand | O31986 |
Ligands and binding sites
- UPG · Uridine-5'-diphosphate-glucose · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1097 | 0.81 | 0.82 | 71 | UPG |
| 2 | 974 | 0.80 | 0.81 | 65 | UPG |
| 3 | 89 | 0.55 | 0.85 | 28 | empty |
| 4 | 92 | 0.34 | 0.74 | 18 | empty |
| 5 | 64 | 0.32 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 3433 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31986
- Elsewhere: RCSB PDB 7MSN · PDBe 7MSN · UniProt O31986
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