MolNFT v1 · #182421 · protein + RNA
Bartonella henselae nrnc bound to pgg. C1 reconstruction.
7MQC · Nanornase C: “Bartonella henselae nrnc bound to pgg. C1 reconstruction.”. Electron microscopy, 16 pockets (best druggability 0.72). MolNFT v1 #182421 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MQC
- Type
- protein + RNA
- Length
- 1,656 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nanornase C; RNA (5'-R(P*GP*G)-3')
- UniProt
- X5MEI1
- Pockets
- 16 · best druggability 0.72
Structure
electron microscopy · 2 distinct chains · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, M, O | Nanornase C | protein | 205 | 41% helix, 16% strand | X5MEI1 |
| B, D, F, H, J, L, N, P | RNA (5'-R(P*GP*G)-3') | rna | 2 | — | — |
Pockets
16 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 753 | 0.72 | 0.78 | 92 | empty |
| 2 | 671 | 0.71 | 0.79 | 86 | empty |
| 3 | 553 | 0.69 | 0.78 | 58 | empty |
| 4 | 504 | 0.67 | 0.78 | 56 | empty |
| 5 | 145 | 0.46 | 0.77 | 25 | empty |
Interfaces
40 interfaces between chains.
- G–O · 1263 Ų buried · 6 hydrogen bonds · protein-protein
- E–I · 1240 Ų buried · 6 hydrogen bonds · protein-protein
- A–M · 1213 Ų buried · 5 hydrogen bonds · protein-protein
- C–K · 1166 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 446 Ų buried · 12 hydrogen bonds · protein-nucleic
Compared structures
- 7MQC · Bartonella henselae NrnC bound to pGG. C1 reconstruction. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X5MEI1
- Elsewhere: RCSB PDB 7MQC · PDBe 7MQC · UniProt X5MEI1
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