MolNFT v1 · #182229 · protein + DNA + RNA
Escherichia COLI RNA polymerase and rapa elongation complex
7MKN: “Escherichia COLI RNA polymerase and rapa elongation complex”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #182229 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MKN
- Type
- protein + DNA + RNA
- Length
- 4,240 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A4S5AL01, A0A4S4NK82, A0A6D2WUT6, P0A800, P60240
- Ligands
- ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 231 | — | A0A4S5AL01 |
| B | — | protein | 230 | — | A0A4S5AL01 |
| C | — | protein | 1340 | — | A0A4S4NK82 |
| D | — | protein | 1340 | — | A0A6D2WUT6 |
| E | — | protein | 69 | — | P0A800 |
| L | — | protein | 967 | — | P60240 |
| N | — | dna | 22 | — | — |
| R | — | rna | 11 | — | — |
| T | — | dna | 30 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MKN · Escherichia coli RNA polymerase and RapA elongation complex · the same entry in another collection · chain R against R, TM-score 1.00
- P60240 · AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (P60240) · a predicted model of the same protein · chain L against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A4S5AL01
- Every structure of UniProt A0A4S4NK82
- Every structure of UniProt A0A6D2WUT6
- Every structure of UniProt P0A800
- Every structure of UniProt P60240
- Elsewhere: RCSB PDB 7MKN · PDBe 7MKN · UniProt A0A4S5AL01 · UniProt A0A4S4NK82 · UniProt A0A6D2WUT6 · UniProt P0A800 · UniProt P60240
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