MolNFT v1 · #182209 · protein
Crystal structure of NPR1
7MK3 · Regulatory protein NPR1: “Crystal structure of NPR1”. X-ray diffraction, 2 ligands (ZN, CL), 6 pockets (best druggability 0.75). MolNFT v1 #182209 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MK3
- Type
- protein
- Length
- 726 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory protein NPR1
- UniProt
- P93002
- Ligands
- ZN, CL
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 61% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory protein NPR1 | protein | 361 | 60% helix, 4% strand | P93002 |
| B | Regulatory protein NPR1 | protein | 365 | 61% helix, 5% strand | P93002 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 5 copies · chains A, B
- GOL · Glycerol · additive · 10 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 936 | 0.75 | 0.78 | 103 | GOL, CL |
| 2 | 852 | 0.75 | 0.79 | 95 | GOL, CL |
| 3 | 108 | 0.43 | 0.78 | 22 | empty |
| 4 | 90 | 0.35 | 0.74 | 15 | empty |
| 5 | 56 | 0.33 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1340 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93002
- Elsewhere: RCSB PDB 7MK3 · PDBe 7MK3 · UniProt P93002
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