MolNFT v1 · #182138 · protein

Crystal structure of glycosyltransferase from rickettsia africae esf-5

7MI0: “Crystal structure of glycosyltransferase from rickettsia africae esf-5”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.65). MolNFT v1 #182138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7MI0
Type: protein
Length: 379 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyltransferase
UniProt: C3PN56
Ligands: CL
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyltransferase	protein	379	46% helix, 17% strand	C3PN56

Ligands and binding sites

CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	513	0.65	0.77	45	empty
2	140	0.63	0.86	25	empty

Compared structures

7MI0 · Crystal Structure of Glycosyltransferase from Rickettsia africae ESF-5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3PN56
Elsewhere: RCSB PDB 7MI0 · PDBe 7MI0 · UniProt C3PN56

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