MolNFT v1 · #182032 · protein
BG505 SOSIP.V5.2(7S) in complex with the monoclonal antibodies RH.33172 MAB.1 and RM19R
7MEP: “BG505 SOSIP.V5.2(7S) in complex with the monoclonal antibodies RH.33172 MAB.1 and RM19R”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #182032 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MEP
- Type
- protein
- Length
- 2,596 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G, K | — | protein | 105 | — | — |
| I, M, N | — | protein | 118 | — | — |
| A | — | protein | 440 | — | — |
| B, E, F | — | protein | 123 | — | — |
| H | — | protein | 128 | — | — |
| L | — | protein | 107 | — | — |
| J | — | protein | 104 | — | — |
| C | — | protein | 441 | — | — |
| D | — | protein | 443 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 81 copies · chains A, H, L, C, D, B, G, E, J, F, K
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MEP · BG505 SOSIP.v5.2(7S) in complex with the monoclonal antibodies Rh.33172 mAb.1 and RM19R · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7MEP · PDBe 7MEP
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