MolNFT v1 · #181882 · protein
Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 29
7M8Z: “Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 29”. X-ray diffraction, 1 ligand (YTV). MolNFT v1 #181882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M8Z
- Type
- protein
- Length
- 297 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- YTV
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 297 | — | P0DTD1 |
Ligands and binding sites
- YTV · 5-{3-[3-chloro-5-(3-hydroxy-3-methylbutoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M8Z · Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 29 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7M8Z · PDBe 7M8Z · UniProt P0DTD1
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