MolNFT v1 · #181869 · protein
Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 11
7M8M: “Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 11”. X-ray diffraction, 1 ligand (YSG). MolNFT v1 #181869 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M8M
- Type
- protein
- Length
- 604 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
- Ligands
- YSG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 301 | — | P0DTD1 |
| B | — | protein | 303 | — | P0DTD1 |
Ligands and binding sites
- YSG · 5-[3-(3-chloro-5-propoxyphenyl)-2-oxo-2H-[1,3'-bipyridin]-5-yl]pyrimidine-2,4(1H,3H)-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M8M · Crystal structure of the SARS-cov-2(2019-ncov) main protease in complex with compound 11 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 7M8M · PDBe 7M8M · UniProt P0DTD1
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