MolNFT v1 · #181717 · protein
Canine parvovirus and FAB14 at partial occupancy
7M3M · Capsid protein 2: “Canine parvovirus and FAB14 at partial occupancy”. Electron microscopy, 8 pockets (best druggability 0.73). MolNFT v1 #181717 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M3M
- Type
- protein
- Length
- 532 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein 2
- UniProt
- B2ZG07
- Pockets
- 8 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain · 9% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein 2 | protein | 532 | 9% helix, 29% strand | B2ZG07 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 842 | 0.73 | 0.77 | 97 | empty |
| 2 | 60 | 0.60 | 0.91 | 22 | empty |
| 3 | 451 | 0.57 | 0.74 | 38 | empty |
| 4 | 87 | 0.41 | 0.78 | 20 | empty |
| 5 | 61 | 0.38 | 0.80 | 22 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7M3M · Canine parvovirus and Fab14 at partial occupancy · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2ZG07
- Elsewhere: RCSB PDB 7M3M · PDBe 7M3M · UniProt B2ZG07
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