MolNFT v1 · #181635 · protein
Dgt-28 epsps
7M0O · 3-phosphoshikimate 1-carboxyvinyltransferase: “Dgt-28 epsps”. X-ray diffraction, 2 ligands (K, PO4), 3 pockets (best druggability 0.52). MolNFT v1 #181635 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M0O
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-phosphoshikimate 1-carboxyvinyltransferase
- EC
- 2.5.1.19
- UniProt
- B5HND8
- Ligands
- K, PO4
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | protein | 400 | 39% helix, 24% strand | B5HND8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 332 | 0.52 | 0.74 | 42 | PO4 |
| 2 | 121 | 0.40 | 0.75 | 25 | empty |
| 3 | 67 | 0.29 | 0.73 | 21 | empty |
Compared structures
- 7M0O · Dgt-28 epsps · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5HND8
- Elsewhere: RCSB PDB 7M0O · PDBe 7M0O · UniProt B5HND8
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