MolNFT v1 · #181541 · protein
SARS-cov-2 S/S2M11/S2L28 global refinement
7LXZ: “SARS-cov-2 S/S2M11/S2L28 global refinement”. Electron microscopy, 3 ligands (NAG, FUC, BMA). MolNFT v1 #181541 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LXZ
- Type
- protein
- Length
- 4,557 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, FUC, BMA
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, K | — | protein | 1060 | — | P0DTC2 |
| D, C, L | — | protein | 104 | — | — |
| E, F, M | — | protein | 122 | — | — |
| H, G, N | — | protein | 126 | — | — |
| J, I, O | — | protein | 107 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 69 copies · chains A, C, H, B, L, G, D, K, N
- FUC · alpha-L-fucopyranose · sugar · 6 copies · chains A, F, B, M, E, K
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LXZ · SARS-CoV-2 S/S2M11/S2L28 Global Refinement · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LXZ · PDBe 7LXZ · UniProt P0DTC2
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