MolNFT v1 · #181337 · protein
Cryo-EM structure of SARS-cov-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
7LRT: “Cryo-EM structure of SARS-cov-2 spike in complex with neutralizing antibody A23-58.1 that targets the…”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #181337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LRT
- Type
- protein
- Length
- 4,152 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| F, H | — | protein | 123 | — | — |
| G, L | — | protein | 108 | — | — |
| D | — | protein | 216 | — | — |
| E | — | protein | 213 | — | — |
| A | — | protein | 1085 | — | P0DTC2 |
| B | — | protein | 1088 | — | P0DTC2 |
| C | — | protein | 1088 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 71 copies · chains F, G, H, L, D, E, A, B, C
- BMA · beta-D-mannopyranose · sugar · 7 copies
- MAN · alpha-D-mannopyranose · sugar · 6 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LRT · Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LRT · PDBe 7LRT · UniProt P0DTC2
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