MolNFT v1 · #181236 · protein
SARS-cov-2 papain-like protease (plpro) bound to inhibitor XR8-65
7LOS: “SARS-cov-2 papain-like protease (plpro) bound to inhibitor XR8-65”. X-ray diffraction, 4 ligands (Y97, ZN, SO4). MolNFT v1 #181236 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LOS
- Type
- protein
- Length
- 632 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC1
- Ligands
- Y97, ZN, SO4, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 316 | — | P0DTC1 |
Ligands and binding sites
- Y97 · 5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide · ligand · 2 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LOS · SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-65 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC1
- Elsewhere: RCSB PDB 7LOS · PDBe 7LOS · UniProt P0DTC1
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