MolNFT v1 · #181085 · protein
Oxidized rat cytochrome C mutant (K53Q)
7LJX · Cytochrome C, somatic: “Oxidized rat cytochrome C mutant (K53Q)”. X-ray diffraction, 2 ligands (HEC, FC6), 2 pockets (best druggability 0.80). MolNFT v1 #181085 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LJX
- Type
- protein
- Length
- 208 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C, somatic
- UniProt
- P62898
- Ligands
- HEC, FC6
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytochrome C, somatic | protein | 104 | 41% helix, 2% strand | P62898 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 188 | 0.80 | 0.94 | 33 | HEC |
| 2 | 260 | 0.76 | 0.89 | 44 | HEC |
Interfaces
1 interface between chains.
- A–B · 481 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (heme c attachment).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P62898
- Elsewhere: RCSB PDB 7LJX · PDBe 7LJX · UniProt P62898
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