MolNFT v1 · #181068 · protein
Cryo-EM structure of the mpa hexamer in the presence of ATP and the pup-fabd substrate
7LJF: “Cryo-EM structure of the mpa hexamer in the presence of ATP and the pup-fabd substrate”. Electron microscopy, 3 ligands (ADP, ATP, MG). MolNFT v1 #181068 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LJF
- Type
- protein
- Length
- 2,007 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A045JPX7
- Ligands
- ADP, ATP, MG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 454 | — | A0A045JPX7 |
| C | — | protein | 427 | — | A0A045JPX7 |
| D, E | — | protein | 123 | — | A0A045JPX7 |
| F | — | protein | 426 | — | A0A045JPX7 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains B, C
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LJF · Cryo-EM structure of the Mpa hexamer in the presence of ATP and the Pup-FabD substrate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A045JPX7
- Elsewhere: RCSB PDB 7LJF · PDBe 7LJF · UniProt A0A045JPX7
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