MolNFT v1 · #180977 · protein

Cyanophycin synthetase from a. baylyi DSM587 with ATP

7LGM · Cyanophycin synthase: “Cyanophycin synthetase from a. baylyi DSM587 with ATP”. Electron microscopy, 1 ligand (ATP), 17 pockets (best druggability 0.73). MolNFT v1 #180977 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7LGM
Type: protein
Length: 1,438 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyanophycin synthase
EC: 6.3.2.29, 6.3.2.30
UniProt: Q6FCQ7
Ligands: ATP
Pockets: 17 · best druggability 0.73

Structure

electron microscopy · 1 distinct chain · 30% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Cyanophycin synthase (EC 6.3.2.29, 6.3.2.30)	protein	719	30% helix, 20% strand	Q6FCQ7

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	930	0.73	0.77	86	empty
2	763	0.72	0.78	55	ATP
3	666	0.72	0.79	51	ATP
4	752	0.71	0.77	67	empty
5	124	0.64	0.87	30	empty

Interfaces

1 interface between chains.

A–B · 1643 Å² buried · 26 hydrogen bonds · protein-protein

Compared structures

7LGM · Cyanophycin synthetase from A. baylyi DSM587 with ATP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6FCQ7
Elsewhere: RCSB PDB 7LGM · PDBe 7LGM · UniProt Q6FCQ7

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