MolNFT v1 · #18094 · protein

Putidaredoxin

1PDX · Protein (putidaredoxin): “Putidaredoxin”. Solution nmr, 1 ligand (FES), 1 pocket (best druggability 0.37). MolNFT v1 #18094 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1PDX
Type: protein
Length: 106 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (putidaredoxin)
UniProt: P00259
Ligands: FES
Pockets: 1 · best druggability 0.37

Structure

solution nmr · 1 distinct chain · 23% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (putidaredoxin)	protein	106	23% helix, 16% strand	P00259

Ligands and binding sites

FES · Fe2/s2 (inorganic) cluster · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.37	0.79	17	empty

Compared structures

1PDX · Putidaredoxin · the same entry in another collection · chain A against A, TM-score 1.00
P00259 · AlphaFold monomer V2.0 prediction for putidaredoxin (P00259) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00259
Elsewhere: RCSB PDB 1PDX · PDBe 1PDX · UniProt P00259

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