MolNFT v1 · #180853 · protein
Structure of SARS-cov-2 S protein in complex with receptor binding domain antibody DH1047
7LD1: “Structure of SARS-cov-2 S protein in complex with receptor binding domain antibody DH1047”. Electron microscopy, 2 ligands (NAG, BMA). MolNFT v1 #180853 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LD1
- Type
- protein
- Length
- 4,249 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 973 | — | P0DTC2 |
| C | — | protein | 949 | — | P0DTC2 |
| M, P, H | — | protein | 232 | — | — |
| N, L | — | protein | 219 | — | — |
| O | — | protein | 220 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 54 copies · chains A, B, C
- BMA · beta-D-mannopyranose · sugar · 13 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LD1 · Structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1047 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LD1 · PDBe 7LD1 · UniProt P0DTC2
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