MolNFT v1 · #180798 · protein
Cryoem structure of the hcmv trimer ghglgo in complex with human transforming growth factor beta receptor type 3 and neutralizing fabs 13H11 and msl-109
7LBG: “Cryoem structure of the hcmv trimer ghglgo in complex with human transforming growth factor beta receptor…”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #180798 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7LBG
- Type
- protein
- Length
- 1,788 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6SW67, F5HCH8, Q8BCU3, Q03167
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 635 | — | Q6SW67 |
| B | — | protein | 234 | — | F5HCH8 |
| C | — | protein | 296 | — | Q8BCU3 |
| D | — | protein | 156 | — | Q03167 |
| E | — | protein | 106 | — | — |
| F | — | protein | 121 | — | — |
| G | — | protein | 111 | — | — |
| H | — | protein | 129 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains C, A, B
- MAN · alpha-D-mannopyranose · sugar · 4 copies · chains C
- BMA · beta-D-mannopyranose · sugar · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LBG · CryoEM structure of the HCMV Trimer gHgLgO in complex with human Transforming growth… · the same entry in another collection · chain H against H, TM-score 1.00
- Q03167 · AlphaFold monomer V2.0 prediction for transforming growth factor beta receptor type 3… · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6SW67
- Every structure of UniProt F5HCH8
- Every structure of UniProt Q8BCU3
- Every structure of UniProt Q03167
- Elsewhere: RCSB PDB 7LBG · PDBe 7LBG · UniProt Q6SW67 · UniProt F5HCH8 · UniProt Q8BCU3 · UniProt Q03167
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