MolNFT v1 · #180693 · protein
BG505 sosip MD39 in complex with the polyclonal Fab pabc-2 from animal RH.32034 (WK26 time point)
7L87: “BG505 sosip MD39 in complex with the polyclonal Fab pabc-2 from animal RH.32034 (WK26 time point)”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #180693 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L87
- Type
- protein
- Length
- 1,901 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 121 | — | — |
| L | — | protein | 103 | — | — |
| C, A, D | — | protein | 435 | — | — |
| E, B, F | — | protein | 124 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 91 copies · chains C, E, A, B, D, F
- BMA · beta-D-mannopyranose · sugar · 6 copies
- MAN · alpha-D-mannopyranose · sugar · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L87 · BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-2 from animal Rh.32034 (Wk26… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7L87 · PDBe 7L87
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